GMS6230: Bioinformatics for next generation sequencing. Upper graduate-level course. Co-developed with Dr. Irianto.
This course is designed for students with biological background and limited programming experience to get hands-on experience of bioinformatic analysis of next generation sequencing data. Students with computational background are also welcome to take this course to get exposure to standard genomics pipeline and biological techniques.
Topics covered in this course: next generation sequencing, cluster computing, basic command line tools and R for analyzing various sequencing data, including common pipelines for end-to-end processing of RNA-seq, single-cell RNA-seq, DNA-seq, ATAC-seq, and ChIP-seq.